93 research outputs found
Ecosystem-bedrock interaction changes nutrient compartmentalization during early oxidative weathering
Ecosystem-bedrock interactions power the biogeochemical cycles of Earth's
shallow crust, supporting life, stimulating substrate transformation, and
spurring evolutionary innovation. While oxidative processes have dominated half
of terrestrial history, the relative contribution of the biosphere and its
chemical fingerprints on Earth's developing regolith are still poorly
constrained. Here, we report results from a two-year incipient weathering
experiment. We found that the mass release and compartmentalization of major
elements during weathering of granite, rhyolite, schist and basalt was
rock-specific and regulated by ecosystem components.
A tight interplay between physiological needs of different biota, mineral
dissolution rates, and substrate nutrient availability resulted in intricate
elemental distribution patterns. Biota accelerated CO2 mineralization over
abiotic controls as ecosystem complexity increased, and significantly modified
stoichiometry of mobilized elements. Microbial and fungal components inhibited
element leaching (23.4% and 7%), while plants increased leaching and biomass
retention by 63.4%. All biota left comparable biosignatures in the dissolved
weathering products. Nevertheless, the magnitude and allocation of weathered
fractions under abiotic and biotic treatments provide quantitative evidence for
the role of major biosphere components in the evolution of upper continental
crust, presenting critical information for large-scale biogeochemical models
and for the search for stable in situ biosignatures beyond Earth.Comment: 41 pages (MS, SI and Data), 16 figures (MS and SI), 6 tables (SI and
Data). Journal article manuscrip
Positivity of the English language
Over the last million years, human language has emerged and evolved as a
fundamental instrument of social communication and semiotic representation.
People use language in part to convey emotional information, leading to the
central and contingent questions: (1) What is the emotional spectrum of natural
language? and (2) Are natural languages neutrally, positively, or negatively
biased? Here, we report that the human-perceived positivity of over 10,000 of
the most frequently used English words exhibits a clear positive bias. More
deeply, we characterize and quantify distributions of word positivity for four
large and distinct corpora, demonstrating that their form is broadly invariant
with respect to frequency of word use.Comment: Manuscript: 9 pages, 3 tables, 5 figures; Supplementary Information:
12 pages, 3 tables, 8 figure
Synthesis, characterization, DNA binding, topoisomerase inhibition, and apoptosis induction studies of a novel cobalt(III) complex with a thiosemicarbazone ligand
In this study, 9-anthraldehyde-N(4)-methylthiosemicarbazone (MeATSC) 1 and [Co(phen)(OCO)]Cl·6HO 2 (where phen = 1,10-phenanthroline) were synthesized. [Co(phen)(OCO)]Cl·6HO 2 was used to produce anhydrous [Co(phen)(HO)](NO)3. Subsequently, anhydrous [Co(phen)(HO)](NO)3 was reacted with MeATSC 1 to produce [Co(phen)(MeATSC)](NO)·1.5HO·CHOH 4. The ligand, MeATSC 1 and all complexes were characterized by elemental analysis, FT IR, UV-visible, and multinuclear NMR (H, C, and Co) spectroscopy, along with HRMS, and conductivity measurements, where appropriate. Interactions of MeATSC 1 and complex 4 with calf thymus DNA (ctDNA) were investigated by carrying out UV-visible spectrophotometric studies. UV-visible spectrophotometric studies revealed weak interactions between ctDNA and the analytes, MeATSC 1 and complex 4 (K = 8.1 × 10 and 1.6 × 10 M, respectively). Topoisomerase inhibition assays and cleavage studies proved that complex 4 was an efficient catalytic inhibitor of human topoisomerases I and IIα. Based upon the results obtained from the 3-(4,5-dimethylthiazol-2-yl)-5-(3-carboxymethoxyphenyl)-2-(4-sulfophenyl)-2H-tetrazolium (MTS) assay on 4T1-luc metastatic mammary breast cancer cells (IC = 34.4 ± 5.2 μM when compared to IC = 13.75 ± 1.08 μM for the control, cisplatin), further investigations into the molecular events initiated by exposure to complex 4 were investigated. Studies have shown that complex 4 activated both the apoptotic and autophagic signaling pathways in addition to causing dissipation of the mitochondrial membrane potential (ΔΨ). Furthermore, activation of cysteine-aspartic proteases3 (caspase 3) in a time- and concentration-dependent manner coupled with the ΔΨ, studies implicated the intrinsic apoptotic pathway as the major regulator of cell death mechanism
Direct observation of topoisomerase IA gate dynamics
Type IA topoisomerases cleave single-stranded DNA and relieve negative supercoils in discrete steps corresponding to the passage of the intact DNA strand through the cleaved strand. Although type IA topoisomerases are assumed to accomplish this strand passage via a protein-mediated DNA gate, opening of this gate has never been observed. We developed a single-molecule assay to directly measure gate opening of the Escherichia coli type IA topoisomerases I and III. We found that after cleavage of single-stranded DNA, the protein gate opens by as much as 6.6 nm and can close against forces in excess of 16 pN. Key differences in the cleavage, ligation, and gate dynamics of these two enzymes provide insights into their different cellular functions. The single-molecule results are broadly consistent with conformational changes obtained from molecular dynamics simulations. These results allowed us to develop a mechanistic model of interactions between type IA topoisomerases and single-stranded DNA
Smart photo selection: Interpret gaze as personal interest
Manually selecting subsets of photos from large collections in order to present them to friends or colleagues or to print them as photo books can be a tedious task. Today, fully automatic approaches are at hand for supporting users. They make use of pixel information extracted from the images, analyse contextual information such as capture time and focal aperture, or use both to determine a proper subset of photos. However, these approaches miss the most important factor in the photo selection process: the user. The goal of our approach is to consider individual interests. By recording and analysing gaze information from the user's viewing photo collections, we obtain information on user's interests and use this information in the creation of personal photo selections. In a controlled experiment with 33 participants, we show that the selections can be significantly improved over a baseline approach by up to 22% when taking individual viewing behaviour into account. We also obtained significantly better results for photos taken at an event participants were involved in compared with photos from another event
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